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Title: Parallelization of bioinformatics methods using a computational grid

Authors: Mariani, Mauricio A.; Oldra, Samuel B.;Precious, Adewopo

Topic: Computer Science

Abstract:

Recent advances in computer science improve research in several areas. These include an area with great emphasis, the biology, which is the field of study of this work. The use of computer for analysis of data, and processing methods of biology is called bioinformatics. However, when are analyzed DNA sequences from complex organisms which have thousands nucleotides is required a greater processing power. Due to the increase the amount of data to be processed we can use HPCA. Within this context in this work, we study the use of computing capabilities in performance processing DNA sequences. More specifically the parallelization of methods used by the research group in bioinformatics at UCS(University of Caxias do Sul). For development this work we chose to use computational grids, since this type of platform provides a high processing capacity at low cost.

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    COMMENT - 1

  • Madhu Sudan Dahal (Viewer) 26th Nov 2015 - 1:25 PM
    dear Marianisir,

    Good article. This kind of research should be done with importance.
    Please elaborate what your research findings about the computing capabilities in performance processing DNA sequence.
    • MAURICIO ADAMI MARIANI (Author) 26th Nov 2015 - 5:08 PM
      Thank you to everyone about comments.

  • COMMENT - 2

  • S. Sivashankari (Viewer) 26th Nov 2015 - 1:53 PM
    Dear Author,

    A very good initiative. Was the developed computational grid tested with bioinformatics analysis?
    • MAURICIO ADAMI MARIANI (Author) 26th Nov 2015 - 5:15 PM
      We tested in OurGrid from Federal University of Campina Grande - Brazil. Is based in MyGrid.

  • COMMENT - 3

  • Nileshkumar Madhubhai Baria (Viewer) 26th Nov 2015 - 2:42 PM
    Dr.Nileshkumar M Baria ( Viewer ).
    very good innovative article. how this computational grid beneficial to parallelization of bioinformatics characterization ?
    • MAURICIO ADAMI MARIANI (Author) 26th Nov 2015 - 5:16 PM
      Hi. The main beneficial is the large scale processing, in particular this plataform(Ourgrid) is simple and easy to use.

  • COMMENT - 4

  • R SANTHANAKRISHNAN (Viewer) 26th Nov 2015 - 4:11 PM
    Dear Mariani, Mauricio A.; Oldra, Samuel B.;Precious, Adewopo,

    You have done a very good job on the parallelization methods of computing capabilities
    using low cost computational grids for the advanced study of Molecular biology and Bio Informatics.
    Heart congrats for bringing your paper in a very systematic manner.

    Dr. R. Santhanakrishnan, Ph.D.
    • MAURICIO ADAMI MARIANI (Author) 26th Nov 2015 - 5:17 PM
      Thank you very much.

  • COMMENT - 5

  • Chinyere Nkiruka Okafor (Viewer) 26th Nov 2015 - 5:19 PM
    Good article.
    • MAURICIO ADAMI MARIANI (Author) 26th Nov 2015 - 5:21 PM
      Thank you very much!